Publications

2020
Mordes DA, Morrison BM, Ament XH, Cantrell C, Mok J, Eggan P, Xue C, Wang J-Y, Eggan K, Rothstein JD. Absence of survival and motor deficits in 500 repeat C9ORF72 BAC mice. Neuron. 2020;108 (4) :775-783. e4.
Rogers MA, Buffolo F, Schlotter F, Atkins SK, Lee LH, Halu A, Blaser MC, Tsolaki E, Higashi H, Luther K, et al. Annexin A1–dependent tethering promotes extracellular vesicle aggregation revealed with single–extracellular vesicle analysis. Science Advances. 2020;6 (38) :eabb1244. Publisher's VersionAbstract
Protein-mediated tethering of vesicles in the extracellular matrix contributes to microcalcification formation. Extracellular vesicles (EVs) including plasma membrane–derived microvesicles and endosomal-derived exosomes aggregate by unknown mechanisms, forming microcalcifications that promote cardiovascular disease, the leading cause of death worldwide. Here, we show a framework for assessing cell-independent EV mechanisms in disease by suggesting that annexin A1 (ANXA1)–dependent tethering induces EV aggregation and microcalcification. We present single-EV microarray, a method to distinguish microvesicles from exosomes and assess heterogeneity at a single-EV level. Single-EV microarray and proteomics revealed increased ANXA1 primarily on aggregating and calcifying microvesicles. ANXA1 vesicle aggregation was suppressed by calcium chelation, altering pH, or ANXA1 neutralizing antibody. ANXA1 knockdown attenuated EV aggregation and microcalcification formation in human cardiovascular cells and acellular three-dimensional collagen hydrogels. Our findings explain why microcalcifications are more prone to form in vulnerable regions of plaque, regulating critical cardiovascular pathology, and likely extend to other EV-associated diseases, including autoimmune and neurodegenerative diseases and cancer.
Morriss NJ, Conley GM, Ospina SM, Meehan III WP, Qiu J, Mannix R. Automated quantification of immunohistochemical staining of large animal brain tissue using QuPath software. Neuroscience. 2020;429 :235-244.
Rapoport L, Emmerich T, Varanasi KK. Capturing bubbles and preventing foam using aerophilic surfaces. Advanced Materials Interfaces. 2020;7 (6) :1901599.
Valcourt JR, Huang R, Kundu S, Venkatasubramanian D, Kingston RE, Ramanathan S. Changing the Waddington landscape to control mesendoderm competence. bioRxiv. 2020 :867010.
Baum ML, Wilton DK, Muthukumar A, Fox RG, Carey A, Crotty W, Scott-Hewitt N, Bien E, Sabatini DA, Lanser T. CUB and Sushi Multiple Domains 1 (CSMD1) opposes the complement cascade in neural tissues. bioRxiv. 2020.
Levy JM, Yeh W-H, Pendse N, Davis JR, Hennessey E, Butcher R, Koblan LW, Comander J, Liu Q, Liu DR. Cytosine and adenine base editing of the brain, liver, retina, heart and skeletal muscle of mice via adeno-associated viruses. Nature biomedical engineering. 2020;4 (1) :97-110.
Guitchounts G, Masis J, Wolff SBE, Cox D. Encoding of 3D head orienting movements in the primary visual cortex. Neuron. 2020;108 (3) :512-525. e4.
Grolman JM, Weinand P, Mooney DJ. Extracellular matrix plasticity as a driver of cell spreading. Proceedings of the National Academy of Sciences. 2020;117 (42) :25999-26007.
Amamoto R, Zuccaro E, Curry NC, Khurana S, Chen H-H, Cepko CL, Arlotta P. FIN-Seq: transcriptional profiling of specific cell types from frozen archived tissue of the human central nervous system. Nucleic Acids Research. 2020;48 (1) :e4-e4.
Subramanian B, Chun J, Perez-Gill C, Yan P, Stillman IE, Higgs HN, Alper SL, Schlöndorff JS, Pollak MR. FSGS-causing INF2 mutation impairs cleaved INF2 N-fragment functions in podocytes. Journal of the American Society of Nephrology. 2020;31 (2) :374-391.
Davis JC, Alves TC, Helman A, Chen JC, Kenty JH, Cardone RL, Liu DR, Kibbey RG, Melton DA. Glucose response by stem cell-derived β cells in vitro is inhibited by a bottleneck in glycolysis. Cell reports. 2020;31 (6) :107623.
Martenson JS, Tam H, McQuown AJ, Reif D, Zhou J, Denic V. The importomer is a peroxisomal membrane protein translocase. bioRxiv. 2020.
van Gastel N, Spinelli JB, Sharda A, Schajnovitz A, Baryawno N, Rhee C, Oki T, Grace E, Soled HJ, Milosevic J. Induction of a timed metabolic collapse to overcome cancer chemoresistance. Cell metabolism. 2020;32 (3) :391-403. e6.
Garbern JC, Helman A, Sereda R, Sarikhani M, Ahmed A, Escalante GO, Ogurlu R, Kim SL, Zimmerman JF, Cho A. Inhibition of mTOR signaling enhances maturation of cardiomyocytes derived from human-induced pluripotent stem cells via p53-induced quiescence. Circulation. 2020;141 (4) :285-300.
Mannix R, Morriss NJ, Conley GM, Meehan III WP, Nedder A, Qiu J, Float J, DiCesare CA, Myer GD. Internal jugular vein compression collar mitigates histopathological alterations after closed head rotational head impact in swine: A pilot study. Neuroscience. 2020;437 :132-144.
van Gastel N, Stegen S, Eelen G, Schoors S, Carlier A, Daniëls VW, Baryawno N, Przybylski D, Depypere M, Stiers P-J. Lipid availability determines fate of skeletal progenitor cells via SOX9. Nature. 2020;579 (7797) :111-117.
Evans MA, Shields IV WC, Krishnan V, Wang LL‐W, Zhao Z, Ukidve A, Lewandowski M, Gao Y, Mitragotri S. Macrophage‐Mediated Delivery of Hypoxia‐Activated Prodrug Nanoparticles. Advanced Therapeutics. 2020;3 (2) :1900162.
Touloumes GJ, Ardoña HAM, Casalino EK, Zimmerman JF, Chantre CO, Bitounis D, Demokritou P, Parker KK. Mapping 2D-and 3D-distributions of metal/metal oxide nanoparticles within cleared human ex vivo skin tissues. NanoImpact. 2020;17 :100208.
Marlow JJ, Colocci I, Jungbluth SP, Weber NM, Gartman A, Kallmeyer J. Mapping metabolic activity at single cell resolution in intact volcanic fumarole sediment. FEMS Microbiology Letters. 2020;367 (1) :fnaa031.

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