Publications

2022
Min Y, Ballerini ES, Edwards MB, Hodges SA, Kramer EM. Genetic architecture underlying variation in floral meristem termination in Aquilegia. Journal of Experimental Botany. 2022. Publisher's VersionAbstract
Floral organs are produced by floral meristems (FMs), which harbor stem cells in their centers. Since each flower only has a finite number of organs, the stem cell activity of an FM will always terminate at a specific time point, a process termed floral meristem termination (FMT). Variation in the timing of FMT can give rise to floral morphological diversity, but how this process is fine-tuned at a developmental and evolutionary level is poorly understood. Flowers from the genus Aquilegia share identical floral organ arrangement except for stamen whorl number (SWN), making Aquilegia a well-suited system for investigation of this process: differences in SWN between species represent differences in the timing of FMT. By crossing A. canadensis and A. brevistyla, quantitative trait locus (QTL) mapping has revealed a complex genetic architecture with seven QTL. We explored potential candidate genes under each QTL and characterized novel expression patterns of select loci of interest using in situ hybridization. To our knowledge, this is the first attempt to dissect the genetic basis of how natural variation in the timing of FMT is regulated, and our results provide insight into how floral morphological diversity can be generated at the meristematic level.
Ximerakis M, Holton KM, Giadone RM, Ozek C, Saxena M, Santiago S, Adiconis X, Dionne D, Nguyen L, Shah KM. Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types. bioRxiv. 2022.
Clements RL, Morano AA, Navarro FM, McGee JP, Du EW, Streva VA, Lindner SE, Dvorin JD. Identification of basal complex protein that is essential for maturation of transmission-stage malaria parasites. Proceedings of the National Academy of Sciences. 2022;119 (34) :e2204167119. Publisher's VersionAbstract
Malaria remains a global driver of morbidity and mortality. To generate new antimalarials, one must elucidate the fundamental cell biology of Plasmodium falciparum, the parasite responsible for the deadliest cases of malaria. A membranous and proteinaceous scaffold called the inner membrane complex (IMC) supports the parasite during morphological changes, including segmentation of daughter cells during asexual replication and formation of transmission-stage gametocytes. The basal complex lines the edge of the IMC during segmentation and likely facilitates IMC expansion. It is unknown, however, what drives IMC expansion during gametocytogenesis. We describe the discovery of a basal complex protein, PfBLEB, which we find to be essential for gametocytogenesis. Parasites lacking PfBLEB harbor defects in IMC expansion and are unable to form mature gametocytes. This article demonstrates a role for a basal complex protein outside of asexual division, and, importantly, highlights a potential molecular target for the ablation of malaria transmission.
Guerra San Juan I, Nash LA, Smith KS, Leyton-Jaimes MF, Qian M, Klim JR, Limone F, Dorr AB, Couto A, Pintacuda G. Loss of mouse Stmn2 function causes motor neuropathy. Neuron. 2022;110 (10) :1671-1688. e6.
Anand GM, Megale HC, Murphy SH, Weis T, Lin Z, He Y, Wang X, Liu J, Ramanathan S. Machine learning directed organoid morphogenesis uncovers an excitable system driving human axial elongation. 2022. Publisher's Version
Carman CV, Nikova DN, Sakurai Y, Shi J, Novakovic VA, Rasmussen JT, Lam W, Gilbert GE. Membrane curvature and PS localize coagulation proteins to filopodia and retraction fibers of endothelial cells. Blood Advances. 2022.
Donoughe S, Hoffmann J, Nakamura T, Rycroft CH, Extavour CG. Nuclear speed and cycle length co-vary with local density during syncytial blastoderm formation in a cricket. Nature communications. 2022;13 (1) :1-14.
Skylar-Scott MA, Huang JY, Lu A, Ng AHM, Duenki T, Liu S, Nam LL, Damaraju S, Church GM, Lewis JA. Orthogonally induced differentiation of stem cells for the programmatic patterning of vascularized organoids and bioprinted tissues. Nature Biomedical Engineering. 2022;6 (4) :449-462.
Sekar PK, Liang XM, Kahng S-J, Shu Z, Dichiara AB, Chung J-H, Wu Y, Gao D. Simultaneous multiparameter whole blood hemostasis assessment using a carbon nanotube-paper composite capacitance sensor. Biosensors and Bioelectronics. 2022;197 :113786.
Wee CL, Song E, Nikitchenko M, Herrera KJ, Wong S, Engert F, Kunes S. Social isolation modulates appetite and avoidance behavior via a common oxytocinergic circuit in larval zebrafish. Nature communications. 2022;13 (1) :1-17.
Schmieder SS, Tatituri R, Anderson M, Kelly K, Lencer WI. Structural basis for acyl chain control over glycosphingolipid sorting and vesicular trafficking. Cell reports. 2022;40 (2) :111063.
Westerling-Bui AD, Fast EM, Soare TW, Venkatachalan S, DeRan M, Fanelli AB, Kyrychenko S, Hoang H, Corriea GM, Zhang W. Transplanted organoids empower human preclinical assessment of drug candidate for the clinic. Science advances. 2022;8 (27) :eabj5633.
2021
Xu H, Lee A, Sun L, Naveh GRS. 3D Imaging of PDL Collagen Fibers during Orthodontic Tooth Movement in Mandibular Murine Model. JoVE (Journal of Visualized Experiments). 2021;(170) :e62149.
Kingsley EP, Hager ER, Lassance JM, Turner KM, Harringmeyer OS, Kirby C, Neugeboren BI, Hoekstra HE. Adaptive tail-length evolution in deer mice is associated with differential Hoxd13 expression in early development. bioRxiv. 2021.
Abitua PB, Aksel DC, Schier AF. Axis formation in annual killifish: Nodal coordinates morphogenesis in absence of Huluwa prepatterning. bioRxiv. 2021.
Amin L, Harris DA. Aβ receptors specifically recognize molecular features displayed by fibril ends and neurotoxic oligomers. Nature Communications. 2021;12 (1) :1-16.
Marlow JJ, Hoer D, Jungbluth SP, Reynard LM, Gartman A, Chavez MS, El-Naggar MY, Tuross N, Orphan VJ, Girguis PR. Carbonate-hosted microbial communities are prolific and pervasive methane oxidizers at geologically diverse marine methane seep sites. Proceedings of the National Academy of Sciences. 2021;118 (25) :e2006857118. Publisher's Version
van der Ven CFT, Tibbitt MW, Conde J, van Mil A, Hjortnaes J, Doevendans PA, Sluijter JPG, Aikawa E, Langer RS. Controlled delivery of gold nanoparticle-coupled miRNA therapeutics via an injectable self-healing hydrogel. Nanoscale. 2021;13 (48) :20451-20461.
Sahni V, Shnider SJ, Jabaudon D, Song JHT, Itoh Y, Greig LC, Macklis JD. Corticospinal neuron subpopulation-specific developmental genes prospectively indicate mature segmentally specific axon projection targeting. Cell reports. 2021;37 (3) :109843.
Absalon S, Dvorin JD. Depletion of the mini‐chromosome maintenance complex binding protein allows the progression of cytokinesis despite abnormal karyokinesis during the asexual development of Plasmodium falciparum. Cellular microbiology. 2021;23 (3) :e13284.

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