Microscope Setup Tutorials
Use this link to familarize yourself with any microsocpe at HCBI and setting up its acquisition parameters.
For a free copy of ZEN lite image processing software, click here: ZEN lite (Windows only). The HCBI recommends frequent downloads of ZEN to ensure your software is up-to-date and compatible with files from our newest microscopes
Click here to download the ZEN Blue Image analysis guide.
For a free copy of Fiji (ImageJ) image processing software, click here: Fiji (Windows or Mac)
Lightsheet .CZI to .TIF converter
The .czi to .tif converter for Lightsheet files is implemented as a Fiji/ImageJ macro. Click here for download, installation and help documents for timelapse/multiview files, and here for tiled files.
AxioScan .CZI to .TIF converter
The .czi to .tif converter for Axioscan files is implemented as a Fiji/ImageJ macro. Click here to download the macro script. Make sure your Bioformats plugin is installed and up to date (5.7.2 recomended).
Click here to view the Volocity User Guide