Software

Microscope Setup Tutorials

Use the ZEISS Portal to familiarize yourself with any microscope at HCBI and setting up its acquisition parameters.

ZEN

For a free copy of ZEN lite image processing software, click here: ZEN lite (Windows only).  The HCBI recommends frequent downloads of ZEN to ensure your software is up-to-date and compatible with files from our newest microscopes.

For image analysis help, use: Zen Blue Image Analysis Guide PDF or the Zen Portal Image Analysis Playlist

Fiji/ImageJ

For a free copy of Fiji (ImageJ) image processing software, click here: Fiji (Windows or Mac)

Click here to be redirected to the extensive Fiji online documentation
Click here for a link to the ImageJ 1 documentation

CellProfiler

CellProfiler Manual

arivis Pro

Click here for arivis Cloud

Click here for an introduction to arivis Cloud

Click here to view six 30-minute introductory videos to the arivis Pro software.
Click here to read several use case and case study documents.
 

IMARIS

Click here to download the IMARIS Reference Guide.
Click here to visit the IMARIS Learning Center